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- PublicationImproving clinical documentation: automatic inference of ICD-10 codes from patient notes using BERT model(2023)Electronic health records provide a vast amount of text health data written by physicians as patient clinical notes. The world health organization released the international classification of diseases version 10 (ICD-10) system to monitor and analyze clinical notes. ICD-10 is system physicians and other healthcare providers use to classify and code all diagnoses and symptom records in conjunction with hospital care. Therefore, the data can be easily stored, retrieved, and analyzed for decision-making. In order to address the problem, this paper introduces a system to classify the clinical notes to ICD-10 codes. This paper examines 7541 clinical notes collected from a health institute in Jordan and annotated by ICD-10’s coders. In addition, the research uses another outsource dataset to augment the actual dataset. The research presented many approaches, such as the baseline and pipeline models. The Baseline model employed several methods like Word2vec embedding for representing the text. The model structure also involves long-short-term memory a convolutional neural network, and two fully-connected layers. The second Pipeline approach adopts the transformer model, such as Bidirectional Encoder Representations from Transformers (BERT), which is pre-trained on a similar health domain. The Pipeline model builds on two BERT models. The first model classifies the category codes representing the first three characters of ICD-10. The second BERT model uses the outputs from the general BERT model (first model) as input for the special BERT (second model) to classify the clinical notes into total codes of ICD-10. Moreover, Baseline and Pipeline models applied the Focal loss function to eliminate the imbalanced classes. However, The Pipeline model demonstrates a significant performance by evaluating it over the F1 score, recall, precision, and accuracy metric, which are 92.5%, 84.9%, 91.8%, and 84.97%, respectively.
4 - PublicationGraph-Guided Regularized Regression of Pacific Ocean Climate Variables to Increase Predictive Skill of Southwestern U.S. Winter Precipitation(2021)AbstractUnderstanding the physical drivers of seasonal hydroclimatic variability and improving predictive skill remains a challenge with important socioeconomic and environmental implications for many regions around the world. Physics-based deterministic models show limited ability to predict precipitation as the lead time increases, due to imperfect representation of physical processes and incomplete knowledge of initial conditions. Similarly, statistical methods drawing upon established climate teleconnections have low prediction skill due to the complex nature of the climate system. Recently, promising data-driven approaches have been proposed, but they often suffer from overparameterization and overfitting due to the short observational record, and they often do not account for spatiotemporal dependencies among covariates (i.e., predictors such as sea surface temperatures). This study addresses these challenges via a predictive model based on a graph-guided regularizer that simultaneously promotes similarity of predictive weights for highly correlated covariates and enforces sparsity in the covariate domain. This approach both decreases the effective dimensionality of the problem and identifies the most predictive features without specifying them a priori. We use large ensemble simulations from a climate model to construct this regularizer, reducing the structural uncertainty in the estimation. We apply the learned model to predict winter precipitation in the southwestern United States using sea surface temperatures over the entire Pacific basin, and demonstrate its superiority compared to other regularization approaches and statistical models informed by known teleconnections. Our results highlight the potential to combine optimally the space–time structure of predictor variables learned from climate models with new graph-based regularizers to improve seasonal prediction.
2 - PublicationAutokeras Approach: A Robust Automated Deep Learning Network for Diagnosis Disease Cases in Medical Images(2023)Automated deep learning is promising in artificial intelligence (AI). However, a few applications of automated deep learning networks have been made in the clinical medical fields. Therefore, we studied the application of an open-source automated deep learning framework, Autokeras, for detecting smear blood images infected with malaria parasites. Autokeras is able to identify the optimal neural network to perform the classification task. Hence, the robustness of the adopted model is due to it not needing any prior knowledge from deep learning. In contrast, the traditional deep neural network methods still require more construction to identify the best convolutional neural network (CNN). The dataset used in this study consisted of 27,558 blood smear images. A comparative process proved the superiority of our proposed approach over other traditional neural networks. The evaluation results of our proposed model achieved high efficiency with impressive accuracy, reaching 95.6% when compared with previous competitive models.
2 - PublicationElastic Organic Crystals as Bioinspired Hair‐Like Sensors(2023)One of the typical haptic elements are natural hairy structures that animals and plants rely on for feedback. Although these hair sensors are an admirable inspiration, the development of active flow sensing components having low elastic moduli and high aspect ratios remains a challenge. Here, we report a new sensing approach based on a flexible, thin and optically transmissive organic crystal of high aspect ratio, which is stamped with fluorescent dye for tracking. When subjected to gas flow and exposed to laser, the crystal bends due to exerted pressure and acts as an optical flow (hair) sensor with low detection limit (≈1.578 m s−1) and fast response time (≈2.70 s). The air-flow-induced crystal deformation and flow dynamics response are modelled by finite element analysis. Due to having a simple design and being lightweight and mechanically robust this prototypical crystal hair-like sensor opens prospects for a new class of sensing devices ranging from wearable electronics to aeronautics.
2 - PublicationDiabetes Monitoring System in Smart Health Cities Based on Big Data Intelligence(2023)Diabetes is a metabolic disorder in which the body is unable to properly regulate blood sugar levels. It can occur when the body does not produce enough insulin or when cells become resistant to insulin’s effects. There are two main types of diabetes, Type 1 and Type 2, which have different causes and risk factors. Early detection of diabetes allows for early intervention and management of the condition. This can help prevent or delay the development of serious complications associated with diabetes. Early diagnosis also allows for individuals to make lifestyle changes to prevent the progression of the disease. Healthcare systems play a vital role in the management and treatment of diabetes. They provide access to diabetes education, regular check-ups, and necessary medications for individuals with diabetes. They also provide monitoring and management of diabetes-related complications, such as heart disease, kidney failure, and neuropathy. Through early detection, prevention and management programs, healthcare systems can help improve the quality of life and outcomes for people with diabetes. Current initiatives in healthcare systems for diabetes may fail due to lack of access to education and resources for individuals with diabetes. There may also be inadequate follow-up and monitoring for those who have been diagnosed, leading to poor management of the disease and lack of prevention of complications. Additionally, current initiatives may not be tailored to specific cultural or demographic groups, resulting in a lack of effectiveness for certain populations. In this study, we developed a diabetes prediction system using a healthcare framework. The system employs various machine learning methods, such as K-nearest neighbors, decision tree, deep learning, SVM, random forest, AdaBoost and logistic regression. The performance of the system was evaluated using the PIMA Indians Diabetes dataset and achieved a training accuracy of 82% and validation accuracy of 80%.
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